IL_1MFY_013

3D structure

PDB id

1MFY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AACAAG*CUGCUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1MFY_013 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3648

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

1MFY|7|A|A|7
1MFY|7|A|A|8
1MFY|7|A|C|9
1MFY|7|A|A|10
1MFY|7|A|A|11
1MFY|7|A|G|12
*
1MFY|7|A|C|21
1MFY|7|A|U|22
1MFY|7|A|G|23
1MFY|7|A|C|24
1MFY|7|A|U|25
1MFY|7|A|U|26

Current chains

Chain A

C4 promoter of influneza A virus

Nearby chains