1MFY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1MFY_001 | 1/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_002 | 2/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_003 | 3/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_004 | 4/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_005 | 5/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_006 | 6/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_007 | 7/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_008 | 8/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_009 | 9/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_010 | 10/A/14:19 | UNCG | geometric HL_4U7U_001 HL_61337.5 | |
| HL_1MFY_011 | 11/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_012 | 12/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_013 | 13/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_014 | 14/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 | |
| HL_1MFY_015 | 15/A/14:19 | UNCG | geometric HL_4U7U_001 HL_61337.5 | |
| HL_1MFY_016 | 16/A/14:19 | UNCG | geometric HL_1I6U_001 HL_61337.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1MFY_001 | 1/A/3:5, 1/A/28:29 | No text annotation | ||
| IL_1MFY_002 | 1/A/8:11, 1/A/22:25 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_1MFY_003 | 2/A/3:5, 2/A/28:29 | Single stack bend | geometric IL_7KGA_006 IL_15011.4 | |
| IL_1MFY_004 | 2/A/7:11, 2/A/22:26 | No text annotation | geometric IL_4PHY_006 IL_69301.1 | |
| IL_1MFY_005 | 3/A/3:5, 3/A/28:29 | Single stack bend | geometric IL_7KGA_006 IL_15011.4 | |
| IL_1MFY_033 | 3/A/8:11, 3/A/22:25 | No text annotation | ||
| IL_1MFY_007 | 4/A/3:5, 4/A/28:29 | No text annotation | ||
| IL_1MFY_042 | 4/A/8:12, 4/A/21:25 | No text annotation | ||
| IL_1MFY_043 | 5/A/8:11, 5/A/22:25 | No text annotation | geometric IL_6GYV_002 IL_15225.3 | |
| IL_1MFY_010 | 6/A/3:5, 6/A/28:29 | Single stack bend | geometric IL_7KGA_006 IL_15011.4 | |
| IL_1MFY_044 | 6/A/8:11, 6/A/22:25 | No text annotation | ||
| IL_1MFY_012 | 7/A/3:5, 7/A/28:29 | Single stack bend | geometric IL_7KGA_006 IL_15011.4 | |
| IL_1MFY_036 | 7/A/8:12, 7/A/21:25 | No text annotation | ||
| IL_1MFY_014 | 8/A/3:5, 8/A/28:29 | Single stack bend | geometric IL_7KGA_006 IL_15011.4 | |
| IL_1MFY_045 | 8/A/8:11, 8/A/22:25 | No text annotation | ||
| IL_1MFY_016 | 9/A/3:5, 9/A/28:29 | No text annotation | ||
| IL_1MFY_046 | 9/A/8:11, 9/A/22:25 | No text annotation | ||
| IL_1MFY_018 | 10/A/3:5, 10/A/28:29 | No text annotation | ||
| IL_1MFY_019 | 10/A/8:11, 10/A/22:25 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_1MFY_020 | 11/A/3:5, 11/A/28:29 | No text annotation | ||
| IL_1MFY_040 | 11/A/7:11, 11/A/22:26 | No text annotation | ||
| IL_1MFY_022 | 12/A/3:5, 12/A/28:29 | No text annotation | ||
| IL_1MFY_023 | 12/A/7:11, 12/A/22:26 | No text annotation | ||
| IL_1MFY_024 | 13/A/3:5, 13/A/28:29 | No text annotation | ||
| IL_1MFY_025 | 13/A/7:11, 13/A/22:26 | No text annotation | ||
| IL_1MFY_026 | 14/A/3:5, 14/A/28:29 | Single stack bend | geometric IL_7KGA_006 IL_15011.4 | |
| IL_1MFY_047 | 14/A/7:11, 14/A/22:26 | No text annotation | ||
| IL_1MFY_028 | 15/A/3:5, 15/A/28:29 | No text annotation | ||
| IL_1MFY_048 | 15/A/8:11, 15/A/22:25 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_1MFY_030 | 16/A/3:5, 16/A/28:29 | Single stack bend | geometric IL_8C3A_091 NA | |
| IL_1MFY_031 | 16/A/8:11, 16/A/22:25 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1MFY_032 | Triple non-canonical cWW pairs | ||
| IL_1MFY_006 | No text annotation | ||
| IL_1MFY_008 | No text annotation | ||
| IL_1MFY_034 | Partly complementary | ||
| IL_1MFY_009 | No text annotation | ||
| IL_1MFY_011 | No text annotation | ||
| IL_1MFY_035 | No text annotation | ||
| IL_1MFY_013 | No text annotation | ||
| IL_1MFY_037 | No text annotation | ||
| IL_1MFY_015 | No text annotation | ||
| IL_1MFY_017 | No text annotation | ||
| IL_1MFY_038 | No text annotation | ||
| IL_1MFY_039 | No text annotation | ||
| IL_1MFY_021 | No text annotation | ||
| IL_1MFY_027 | No text annotation | ||
| IL_1MFY_029 | Triple non-canonical cWW pairs | ||
| IL_1MFY_041 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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