IL_1MFY_032

3D structure

PDB id

1MFY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AACAA*UGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1MFY_032 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3118

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

1MFY|1|A|A|7
1MFY|1|A|A|8
1MFY|1|A|C|9
1MFY|1|A|A|10
1MFY|1|A|A|11
*
1MFY|1|A|U|22
1MFY|1|A|G|23
1MFY|1|A|C|24
1MFY|1|A|U|25
1MFY|1|A|U|26

Current chains

Chain A

C4 promoter of influneza A virus

Nearby chains