IL_1MJI_004

3D structure

PDB id

1MJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

1MJI|1|D|C|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18472.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1MJI|1|D|A|34
1MJI|1|D|C|35
1MJI|1|D|C|36
1MJI|1|D|C|37
1MJI|1|D|C|38
*
1MJI|1|D|G|44
1MJI|1|D|A|45
1MJI|1|D|A|46
1MJI|1|D|C|47
1MJI|1|D|U|48

Current chains

Chain D

5S rRNA fragment

Nearby chains

Chain A

50S ribosomal protein L5

Chain B

50S ribosomal protein L5

Chain C

5S rRNA fragment