IL_1N33_047

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

1N33|1|A|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N33_047 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.2082

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

1N33|1|A|C|1060
1N33|1|A|G|1061
*
1N33|1|A|C|1195
1N33|1|A|U|1196
1N33|1|A|G|1197

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain E

30S RIBOSOMAL PROTEIN S5

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14

Chain Y

ANTICODON STEM-LOOP OF SER TRANSFER RNA

Chain Z

A-SITE MESSENGER RNA FRAGMENT