Motif IL_89505.3 Version IL_89505.3 of this group appears in releases 3.95 to 3.95
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-3 | 1-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7A0S_079 | 7A0S | 1.3810 | 0 | Single bulged U | X | LSU rRNA | U | 2197 | U | 2198 | C | 2199 | * | G | 2186 | A | 2187 | cWW | cWW | |
2 | IL_1S03_001 | 1S03 | 1.1764 | 0 | Single bulged U | A | 47-MER | A | 6 | U | 7 | G | 8 | * | C | 41 | U | 42 | cWW | cWW | |
3 | IL_1S03_005 | 1S03 | 1.1859 | 0 | Single bulged U | B | 47-MER | A | 6 | U | 7 | G | 8 | * | C | 41 | U | 42 | cWW | cWW | |
4 | IL_4C7O_001 | 4C7O | 0.8817 | 0 | Single bulged U | E | SRP RNA | G | 38 | U | 39 | A | 40 | * | U | 7 | C | 8 | cWW | cWW | |
5 | IL_4KZD_001 | 4KZD | 1.0116 | 0 | Single bulged U | R | RNA (84-MER) | C | 74 | U | 75 | G | 76 | * | C | 10 | G | 11 | cWW | cWW | |
6 | IL_3W3S_002 | 3W3S | 1.0419 | 0 | Single bulged U | B | Selenocysteine transfer RNA | G | 43 | U | 43|||A | G | 44 | * | C | 26 | C | 27 | cWW | cWW | |
7 | IL_1GID_012 | 1GID | 0.9939 | 0 | Single bulged U | B | P4-P6 RNA RIBOZYME DOMAIN | G | 129 | U | 130 | U | 131 | * | A | 192 | C | 193 | cWW | cWW | |
8 | IL_4WF9_088 | 4WF9 | 0.9054 | 0 | Single bulged U | X | LSU rRNA | U | 2428 | U | 2429 | C | 2430 | * | G | 2441 | G | 2442 | cWW | cWW | |
9 | IL_3KTW_010 | 3KTW | 0.8962 | 0 | Single bulged U | C | SRP RNA | U | 178 | U | 179 | C | 180 | * | G | 152 | G | 153 | ncSH | cWW | ncWW |
10 | IL_8K85_005 | 8K85 | 1.0460 | 0 | B+A | RNA (56-MER) | U | 30 | U | 31 | G | 32 | * | C | 20 | G | 21 | cWW | cWW | ||
11 | IL_8CRE_137 | 8CRE | 0.8057 | 0 | Single bulged U (H) | 1 | LSU rRNA | U | 3346 | U | 3347 | G | 3348 | * | C | 3289 | G | 3290 | cWW | cWW | |
12 | IL_8P9A_358 | 8P9A | 0.7043 | 0 | Single bulged U | AR | LSU rRNA | U | 3381 | U | 3382 | G | 3383 | * | C | 3324 | G | 3325 | cWW | cWW | |
13 | IL_7KKV_001 | 7KKV | 0.6612 | 0 | Single bulged U | B | OLE* RNA | U | 497 | U | 498 | U | 499 | * | A | 506 | G | 507 | cWW | cWW | |
14 | IL_2R8S_004 | 2R8S | 0.5939 | 0 | Single bulged U | R | P4-P6 RNA RIBOZYME DOMAIN | G | 129 | U | 130 | U | 131 | * | A | 192 | C | 193 | cWW | cWW | |
15 | IL_4O26_001 | 4O26 | 0.5848 | 0 | Single bulged U | E | Telomerase TR | G | 181 | U | 182 | C | 183 | * | G | 193 | C | 194 | cWW | cWW | |
16 | IL_2A64_003 | 2A64 | 0.5775 | 0 | Single bulged U | A | ribonuclease P RNA | G | 66 | U | 67 | G | 68 | * | C | 77 | C | 78 | cWW | cWW | |
17 | IL_6JQ6_006 | 6JQ6 | 0.5746 | 0 | Single bulged U | U | RNA (81-MER) | A | 38 | U | 39 | C | 40 | * | G | 55 | U | 56 | cWW | cWW | |
18 | IL_6JQ5_003 | 6JQ5 | 0.5555 | 0 | Single bulged U | A | RNA (82-MER) | A | 38 | U | 39 | C | 40 | * | G | 55 | U | 56 | cWW | cWW | |
19 | IL_6JQ5_006 | 6JQ5 | 0.5631 | 0 | Single bulged U | B | RNA (82-MER) | A | 38 | U | 39 | C | 40 | * | G | 55 | U | 56 | cWW | cWW | |
20 | IL_5J7L_331 | 5J7L | 0.5993 | 0 | Single bulged U | DA | LSU rRNA | U | 2202 | U | 2203 | G | 2204 | * | U | 2220 | G | 2221 | cWW | cWW | |
21 | IL_3TZR_002 | 3TZR | 0.5038 | 0 | Single bulged U | B+A | RNA (16-mer) | G | 105 | U | 106 | G | 107 | * | U | 61 | C | 62 | cWW | cWW | |
22 | IL_8K85_008 | 8K85 | 0.6977 | 0 | A+B | RNA (56-MER) | U | 30 | U | 31 | G | 32 | * | C | 20 | G | 21 | cWW | cWW | ||
23 | IL_8P9A_253 | 8P9A | 0.7763 | 0 | Single bulged U | AR | LSU rRNA | A | 775 | U | 776 | U | 777 | * | A | 755 | U | 756 | cWW | cWW | |
24 | IL_8CRE_027 | 8CRE | 0.7778 | 0 | Single bulged U (H) | 1 | LSU rRNA | A | 771 | U | 772 | U | 773 | * | A | 751 | U | 752 | cWW | cWW | |
25 | IL_5J7L_334 | 5J7L | 0.8719 | 0 | Single bulged U | DA | LSU rRNA | U | 2401 | U | 2402 | C | 2403 | * | G | 2414 | G | 2415 | cWW | cWW | |
26 | IL_8P9A_314 | 8P9A | 0.7043 | 0 | Single bulged U | AR | LSU rRNA | C | 2204 | U | 2205 | G | 2206 | * | C | 2237 | G | 2238 | cWW | cWW | |
27 | IL_6MWN_006 | 6MWN | 0.6714 | 0 | Single bulged U | B | IRES | U | 659 | U | 660 | C | 661 | * | G | 646 | A | 647 | cWW | cWW | |
28 | IL_4WF9_030 | 4WF9 | 0.7260 | 0 | Single bulged U | X | LSU rRNA | A | 969 | U | 970 | U | 971 | * | A | 897 | U | 898 | cWW | cWW | |
29 | IL_2ZY6_002 | 2ZY6 | 0.8442 | 0 | Single bulged U | A | phenylalanyl transfer RNA | G | 10 | U | 11 | G | 12 | * | C | 24 | C | 25 | cWW | cWW | |
30 | IL_8TQX_002 | 8TQX | 0.7891 | 0 | Single bulged U | A+D | Zika virus stem-loop A (SLA) bottom stem | G | 14 | U | 15 | A | 16 | * | U | 4 | C | 5 | cWW | cWW | |
31 | IL_2UWM_003 | 2UWM | 0.8209 | 0 | Single bulged U | D | RNA (23-mer) | C | 25 | U | 26 | G | 27 | * | C | 21 | G | 22 | cWW | cWW | |
32 | IL_8CRE_068 | 8CRE | 0.6354 | 0 | Single bulged U (H) | 1 | LSU rRNA | G | 1556 | U | 1557 | G | 1558 | * | C | 1573 | C | 1574 | cWW | cWW | |
33 | IL_6M0X_002 | 6M0X | 0.7559 | 0 | Single bulged U | B | RNA (71-MER) | A | 59 | U | 60 | G | 61 | * | C | 55 | U | 56 | cWW | cWW | |
34 | IL_6JDV_003 | 6JDV | 0.8397 | 0 | Single bulged U | B | sgRNA | G | 95 | U | 96 | G | 97 | * | C | 81 | C | 82 | cWW | cWW | |
35 | IL_6UFG_004 | 6UFG | 0.5625 | 0 | Single bulged U | A | RNA (166-MER) | U | 138 | U | 139 | C | 140 | * | G | 153 | G | 154 | cWW | cWW | |
36 | IL_6UFH_004 | 6UFH | 0.4692 | 0 | Single bulged U | A | RNA (167-MER) | U | 139 | U | 140 | C | 141 | * | G | 154 | G | 155 | cWW | cWW | |
37 | IL_2A64_002 | 2A64 | 0.3942 | 0 | Single bulged U | A | ribonuclease P RNA | G | 51 | U | 52 | C | 53 | * | G | 395 | C | 396 | cWW | cWW | |
38 | IL_6LT7_001 | 6LT7 | 0.3330 | 0 | Single bulged U | C | 50-mer RNA | G | 46 | U | 47 | U | 48 | * | A | 41 | C | 42 | cWW | cWW | |
39 | IL_8P9A_372 | 8P9A | 0.3088 | 0 | Single bulged U | AT | 5.8S rRNA | A | 89 | U | 90 | C | 91 | * | G | 68 | U | 69 | cWW | cWW | |
40 | IL_8TQX_001 | 8TQX | 0.4840 | 0 | Single bulged U | D+A | Zika virus stem-loop A (SLA) bottom stem | G | 14 | U | 15 | A | 16 | * | U | 4 | C | 5 | cWW | cWW | |
41 | IL_3CUL_007 | 3CUL | 0.6076 | 0 | Single bulged U | C | RNA (92-MER) | U | 17 | U | 18 | C | 19 | * | GTP | 1 | G | 2 | cWW | cWW | |
42 | IL_8CRE_140 | 8CRE | 0.4975 | 0 | Single bulged U (H) | 1 | LSU rRNA | G | 3305 | U | 3306 | A | 3307 | * | U | 3328 | C | 3329 | cWW | cWW | |
43 | IL_8P9A_361 | 8P9A | 0.5485 | 0 | Single bulged U | AR | LSU rRNA | G | 3340 | U | 3341 | A | 3342 | * | U | 3363 | C | 3364 | cWW | cWW | |
44 | IL_3WBM_001 | 3WBM | 0.5151 | 0 | Single bulged U | X+Y | RNA (25-MER) | G | 2 | U | 3 | A | 4 | * | U | 23 | C | 24 | cWW | cWW | |
45 | IL_7KVT_002 | 7KVT | 0.3635 | 0 | Single bulged U | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | G | 50 | U | 51 | A | 52 | * | U | 66 | C | 67 | cWW | cWW | |
46 | IL_3NDB_005 | 3NDB | 0.5580 | 0 | Single bulged U | M | SRP RNA | C | 139 | U | 140 | C | 141 | * | G | 237 | G | 238 | cWW | cWW | |
47 | IL_8CRE_003 | 8CRE | 0.4066 | 0 | Single bulged U (H) | 1+4 | LSU rRNA + 5.8S rRNA | A | 12 | U | 13 | C | 14 | * | G | 144 | U | 145 | cWW | cWW | |
48 | IL_8P9A_232 | 8P9A | 0.4125 | 0 | Single bulged U | AR+AT | LSU rRNA + 5.8S rRNA | A | 13 | U | 14 | C | 15 | * | G | 144 | U | 145 | cWW | cWW | |
49 | IL_8F5G_001 | 8F5G | 0.4718 | 0 | Single bulged U | D | RNA | A | 5 | U | 6 | C | 7 | * | G | 21 | U | 22 | cWW | cWW | |
50 | IL_4FRG_002 | 4FRG | 0.5025 | 0 | Single bulged U | B | cobalamin riboswitch aptamer domain | G | 23 | U | 24 | G | 25 | * | C | 39 | C | 40 | cWW | cWW | |
51 | IL_8P9A_427 | 8P9A | 0.3810 | 0 | Single bulged U | sR | SSU rRNA | G | 1051 | U | 1052 | G | 1053 | * | C | 1066 | C | 1067 | cWW | cWW | |
52 | IL_9DFE_080 | 9DFE | 0.3392 | 0 | Single bulged U | 1A | LSU rRNA | G | 2067 | U | 2068 | G | 2069 | * | C | 2442 | C | 2443 | cWW | cWW | |
53 | IL_5J7L_388 | 5J7L | 0.4034 | 0 | Single bulged U | DA | LSU rRNA | G | 2067 | U | 2068 | G7M | 2069 | * | C | 2442 | C | 2443 | cWW | cWW | |
54 | IL_7A0S_075 | 7A0S | 0.4039 | 0 | Single bulged U | X | LSU rRNA | G | 2050 | U | 2051 | G | 2052 | * | C | 2421 | C | 2422 | cWW | cWW | |
55 | IL_4WF9_080 | 4WF9 | 0.4172 | 0 | Single bulged U | X | LSU rRNA | G | 2094 | U | 2095 | G | 2096 | * | C | 2469 | C | 2470 | cWW | cWW | |
56 | IL_4V9F_074 | 4V9F | 0.4451 | 0 | Single bulged U | 0 | LSU rRNA | A | 2108 | U | 2109 | G | 2110 | * | C | 2477 | U | 2478 | cWW | cWW | |
57 | IL_8P9A_321 | 8P9A | 0.3375 | 0 | Single bulged U | AR | LSU rRNA | G | 2409 | U | 2410 | U | 2411 | * | A | 2811 | C | 2812 | cWW | cWW | |
58 | IL_8CRE_098 | 8CRE | 0.3306 | 0 | Single bulged U (H) | 1 | LSU rRNA | G | 2387 | U | 2388 | U | 2389 | * | A | 2783 | C | 2784 | cWW | cWW | |
59 | IL_2PJP_001 | 2PJP | 0.4747 | 0 | Single bulged U | B | SECIS RNA | G | 16 | U | 17 | U | 18 | * | A | 29 | C | 30 | cWW | cWW | |
60 | IL_2OIU_003 | 2OIU | 0.4506 | 0 | Single bulged U | Q | L1 Ribozyme RNA Ligase | G | 18 | U | 19 | U | 20 | * | A | 41 | C | 42 | cWW | cWW | |
61 | IL_6CZR_126 | 6CZR | 0.4082 | 0 | Single bulged U | 1a | SSU rRNA | U | 363 | U | 364 | C | 365 | * | G | 388 | A | 389 | cWW | cWW | |
62 | IL_5J7L_017 | 5J7L | 0.3645 | 0 | Single bulged U | AA | SSU rRNA | U | 367 | U | 368 | G | 369 | * | C | 392 | A | 393 | cWW | cWW | |
63 | IL_3D2V_001 | 3D2V | 0.4008 | 0 | Single bulged U | A | TPP riboswitch (THI element) | G | 73 | U | 74 | G | 75 | * | C | 5 | C | 6 | cWW | cWW | |
64 | IL_4LFB_014 | 4LFB | 0.3922 | 0 | Single bulged U | A | SSU rRNA | U | 367 | U | 368 | C | 369 | * | G | 392 | A | 393 | cWW | cWW | |
65 | IL_8P9A_396 | 8P9A | 0.3660 | 0 | Single bulged U | sR | SSU rRNA | U | 439 | U | 440 | A | 441 | * | U | 463 | A | 464 | cWW | cWW | |
66 | IL_8CRE_413 | 8CRE | 0.3720 | 0 | Single bulged U (H) | CM | SSU rRNA | U | 437 | U | 438 | A | 439 | * | U | 461 | A | 462 | cWW | cWW | |
67 | IL_7PMM_002 | 7PMM | 0.6925 | 0 | Single bulged U | D | RNA (45mer) containing HP92 of the 23S rRNA | A | 15 | U | 16 | A | 17 | * | U | 31 | U | 32 | cWW | cWW | |
68 | IL_7PMQ_002 | 7PMQ | 0.5450 | 0 | Single bulged U | F | RNA (42-MER) | A | 24 | U | 25 | A | 26 | * | U | 40 | U | 41 | cWW | cWW | |
69 | IL_4V9F_107 | 4V9F | 0.4227 | 0 | Single bulged U | 9 | 5S rRNA | G | 86 | U | 87 | G | 88 | * | C | 95 | C | 96 | cWW | cWW | |
70 | IL_4LFB_042 | 4LFB | 0.5109 | 0 | Single bulged U | A | SSU rRNA | G | 1048 | U | 1049 | G | 1050 | * | C | 1208 | C | 1209 | cWW | cWW | |
71 | IL_5J7L_046 | 5J7L | 0.4729 | 0 | Single bulged U | AA | SSU rRNA | G | 1048 | U | 1049 | G | 1050 | * | C | 1208 | C | 1209 | cWW | cWW | |
72 | IL_8P9A_437 | 8P9A | 0.4902 | 0 | Single bulged U | sR | SSU rRNA | G | 1268 | U | 1269 | G | 1270 | * | C | 1440 | C | 1441 | cWW | cWW | |
73 | IL_8CRE_451 | 8CRE | 0.4759 | 0 | Single bulged U (H) | CM | SSU rRNA | G | 1253 | U | 1254 | G | 1255 | * | C | 1426 | C | 1427 | cWW | cWW | |
74 | IL_3MEI_001 | 3MEI | 0.3871 | 0 | Single bulged U | B+A | RNA (23-mer) | C | 15 | U | 16 | G | 17 | * | C | 7 | G | 8 | cWW | cWW | |
75 | IL_7VTI_004 | 7VTI | 0.3909 | 0 | Single bulged U | B | crRNA | G | 21 | U | 22 | G | 23 | * | C | 14 | C | 15 | cWW | cWW | |
76 | IL_8P9A_281 | 8P9A | 0.3666 | 0 | Single bulged U | AR | LSU rRNA | G | 1207 | U | 1208 | G | 1209 | * | C | 1296 | C | 1297 | cWW | cWW | |
77 | IL_8CRE_056 | 8CRE | 0.3343 | 0 | Single bulged U (H) | 1 | LSU rRNA | G | 1203 | U | 1204 | G | 1205 | * | C | 1292 | C | 1293 | cWW | cWW | |
78 | IL_2PN3_003 | 2PN3 | 0.4951 | 0 | Single bulged U | B+A | RNA (20-mer) | G | 105 | U | 106 | G | 107 | * | U | 61 | C | 62 | cWW | cWW | |
79 | IL_8P9A_403 | 8P9A | 0.2369 | 0 | Single bulged U | sR | SSU rRNA | G | 557 | U | 558 | C | 559 | * | G | 586 | C | 587 | cWW | cWW | |
80 | IL_8CRE_422 | 8CRE | 0.0000 | 0 | Single bulged U (H) | CM | SSU rRNA | G | 555 | U | 556 | C | 557 | * | G | 584 | C | 585 | cWW | cWW | |
81 | IL_4LFB_046 | 4LFB | 0.4988 | 0 | Single bulged U | A | SSU rRNA | C | 1195 | U | 1196 | G | 1197 | * | C | 1060 | G | 1061 | cWW | cWW | |
82 | IL_6CZR_156 | 6CZR | 0.4989 | 0 | Single bulged U | 1a | SSU rRNA | C | 1177 | U | 1178 | G | 1179 | * | C | 1043 | G | 1044 | cWW | cWW | |
83 | IL_8P9A_458 | 8P9A | 0.6060 | 0 | Single bulged U | sR | SSU rRNA | U | 1656 | U | 1657 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW | |
84 | IL_8CRE_472 | 8CRE | 0.6053 | 0 | Single bulged U (H) | CM | SSU rRNA | U | 1643 | U | 1644 | G | 1645 | * | U | 1730 | A | 1731 | cWW | cWW | |
85 | IL_8P9A_357 | 8P9A | 0.4986 | 0 | Single bulged U | AR | LSU rRNA | G | 3318 | U | 3319 | A | 3320 | * | U | 3387 | C | 3388 | cWW | cWW | |
86 | IL_5J7L_298 | 5J7L | 0.4976 | 0 | Single bulged U | DA | LSU rRNA | G | 1459 | U | 1460 | C | 1461 | * | G | 1450 | C | 1451 | cWW | cWW | |
87 | IL_8CRE_136 | 8CRE | 0.5083 | 0 | Single bulged U (H) | 1 | LSU rRNA | G | 3283 | U | 3284 | A | 3285 | * | U | 3352 | C | 3353 | cWW | cWW | |
88 | IL_8VMA_002 | 8VMA | 0.7185 | 0 | Single bulged U | C | RNA (88-MER) | G | 40 | U | 41 | G | 42 | * | C | 36 | C | 37 | cWW | cWW | |
89 | IL_8VMB_001 | 8VMB | 0.5664 | 0 | Single bulged U | R | RNA (83-MER) | G | 40 | U | 41 | G | 42 | * | C | 36 | C | 37 | cWW | cWW | |
90 | IL_4WF9_038 | 4WF9 | 0.4744 | 0 | Single bulged U | X | LSU rRNA | A | 1055 | U | 1056 | A | 1057 | * | U | 1193 | U | 1194 | cWW | cWW | |
91 | IL_5J7L_279 | 5J7L | 0.4209 | 0 | Single bulged U | DA | LSU rRNA | G | 1011 | U | 1012 | C | 1013 | * | G | 1149 | C | 1150 | cWW | cWW | |
92 | IL_9DFE_037 | 9DFE | 0.3870 | 0 | Single bulged U | 1A | LSU rRNA | G | 1011 | U | 1012 | C | 1013 | * | G | 1149 | C | 1150 | cWW | cWW | |
93 | IL_8CRE_053 | 8CRE | 0.3968 | 0 | Single bulged U (H) | 1 | LSU rRNA | A | 1176 | U | 1177 | G | 1178 | * | C | 1320 | U | 1321 | cWW | cWW | |
94 | IL_4V9F_039 | 4V9F | 0.3932 | 0 | Single bulged U | 0 | LSU rRNA | G | 1108 | U | 1109 | G | 1110 | * | C | 1253 | C | 1254 | cWW | cWW | |
95 | IL_8P9A_278 | 8P9A | 0.5351 | 0 | Single bulged U | AR | LSU rRNA | A | 1180 | U | 1181 | A | 1182 | * | U | 1324 | U | 1325 | cWW | cWW | |
96 | IL_7A0S_035 | 7A0S | 0.6025 | 0 | Single bulged U | X | LSU rRNA | A | 1022 | U | 1023 | G | 1024 | * | C | 1160 | U | 1161 | cWW | cWW | |
97 | IL_3SNP_004 | 3SNP | 0.6199 | 0 | Single bulged U | D | ferritin H IRE RNA | G | 18 | U | 19 | U | 20 | * | A | 13 | C | 14 | cWW | cWW | |
98 | IL_8KAL_003 | 8KAL | 0.7233 | 0 | Single bulged U | A | RNA (98-MER) | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | ncWW | |
99 | IL_8KAJ_003 | 8KAJ | 0.7723 | 0 | I | RNA (65-MER) | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | ||
100 | IL_5VW1_002 | 5VW1 | 0.7506 | 0 | Single bulged U | C | sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
101 | IL_4ZT0_004 | 4ZT0 | 0.7292 | 0 | Single bulged U | D | single-guide RNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
102 | IL_7QR8_002 | 7QR8 | 0.7298 | 0 | Single bulged U | A | PTPRC sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
103 | IL_7Z4D_002 | 7Z4D | 0.7293 | 0 | Single bulged U | A | sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
104 | IL_7QQP_002 | 7QQP | 0.7283 | 0 | Single bulged U | A | AAVS1 sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
105 | IL_7ZO1_002 | 7ZO1 | 0.7464 | 0 | Single bulged U | A | CD34 sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
106 | IL_7QQX_002 | 7QQX | 0.7309 | 0 | Single bulged U | A | FANCF sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
107 | IL_7QR0_002 | 7QR0 | 0.7352 | 0 | Single bulged U | A | TRAC sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
108 | IL_5B2T_002 | 5B2T | 0.7338 | 0 | Single bulged U | A | Guide RNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
109 | IL_5FQ5_002 | 5FQ5 | 0.7275 | 0 | Single bulged U | A | SGRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | |
110 | IL_6K4Q_002 | 6K4Q | 0.7509 | 0 | A | sgRNA | G | 58 | U | 59 | C | 60 | * | G | 54 | C | 55 | cWW | cWW | ||
111 | IL_5F9R_003 | 5F9R | 0.7944 | 0 | Single bulged U | A | RNA (116-MER) | G | 76 | U | 77 | C | 78 | * | G | 72 | C | 73 | cWW | cWW | |
112 | IL_8CRE_407 | 8CRE | 0.7694 | 0 | Single bulged U (H) | CM | SSU rRNA | G | 277 | U | 278 | G | 279 | * | C | 273 | C | 274 | cWW | cWW | |
113 | IL_8P9A_390 | 8P9A | 0.9863 | 0 | Single bulged U | sR | SSU rRNA | G | 279 | U | 280 | G | 281 | * | C | 275 | C | 276 | cWW | cWW | |
114 | IL_8P9A_260 | 8P9A | 0.6476 | 0 | Single bulged U | AR | LSU rRNA | C | 873 | U | 874 | G | 875 | * | C | 886 | G | 887 | cWW | cWW | |
115 | IL_8CRE_035 | 8CRE | 0.6460 | 0 | Single bulged U (H) | 1 | LSU rRNA | C | 869 | U | 870 | G | 871 | * | C | 882 | G | 883 | cWW | cWW | |
116 | IL_4V9F_029 | 4V9F | 0.6195 | 0 | Single bulged U | 0 | LSU rRNA | G | 834 | U | 835 | G | 836 | * | C | 847 | C | 848 | cWW | cWW | |
117 | IL_8CRE_013 | 8CRE | 0.6303 | 0 | Single bulged U (H) | 1 | LSU rRNA | G | 188 | U | 189 | U | 190 | * | A | 203 | C | 204 | cWW | cWW | |
118 | IL_8P9A_241 | 8P9A | 0.6281 | 0 | Single bulged U | AR | LSU rRNA | G | 189 | U | 190 | U | 191 | * | A | 204 | C | 205 | cWW | cWW | |
119 | IL_4V9F_013 | 4V9F | 0.5809 | 0 | Single bulged U | 0 | LSU rRNA | G | 307 | U | 308 | C | 309 | * | G | 322 | C | 323 | cWW | cWW | |
120 | IL_1ET4_002 | 1ET4 | 1.0128 | 0 | Major groove intercalation | A | RNA APTAMER, 35-MER | G | 226 | U | 227 | G | 228 | * | C | 218 | C | 219 | cWW | cWW | |
121 | IL_5LYS_008 | 5LYS | 1.2329 | 0 | Single bulged U | B | 7SK RNA | C | 62 | U | 63 | G | 64 | * | C | 45 | G | 46 | cWW | cWW | |
122 | IL_3MXH_003 | 3MXH | 1.4576 | 0 | Major groove intercalation | R | c-di-GMP riboswitch | C | 52 | U | 53 | C | 54 | * | G | 86 | G | 87 | cWW | cWW | |
123 | IL_3IWN_003 | 3IWN | 1.4555 | 0 | Major groove intercalation | A | C-di-GMP riboswitch | C | 42 | U | 43 | C | 44 | * | G | 81 | G | 82 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUG*CC | 26 |
GUC*GC | 22 |
GUU*AC | 10 |
GUA*UC | 9 |
CUG*CG | 9 |
AUC*GU | 7 |
AUG*CU | 6 |
UUC*GG | 5 |
UUC*GA | 4 |
UUG*CG | 4 |
AUA*UU | 4 |
AUU*AU | 3 |
CUC*GG | 3 |
GUG*UC | 2 |
UUA*UA | 2 |
UUG*UA | 2 |
UUU*AG | 1 |
UUG*UG | 1 |
UUC*(GTP)G | 1 |
GU(G7M)*CC | 1 |
UUG*CA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U* | 123 |
Release history
Release | 3.95 |
---|---|
Date | 2025-03-26 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged U (100)
- Single bulged U (H) (16)
- (4)
- Major groove intercalation (3)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.03 | Avg 0.83 | Max 2.05
Coloring options: