#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-31-53-4
1 IL_7A0S_0797A0S1.38100Single bulged UX LSU rRNAU2197U2198C2199*G2186A2187cWWcWW
2 IL_1S03_0011S031.17640Single bulged UA47-MERA6U7G8*C41U42cWWcWW
3 IL_1S03_0051S031.18590Single bulged UB47-MERA6U7G8*C41U42cWWcWW
4 IL_4C7O_0014C7O0.88170Single bulged UESRP RNAG38U39A40*U7C8cWWcWW
5 IL_4KZD_0014KZD1.01160Single bulged URRNA (84-MER)C74U75G76*C10G11cWWcWW
6 IL_3W3S_0023W3S1.04190Single bulged UBSelenocysteine transfer RNAG43U43|||AG44*C26C27cWWcWW
7 IL_1GID_0121GID0.99390Single bulged UBP4-P6 RNA RIBOZYME DOMAING129U130U131*A192C193cWWcWW
8 IL_4WF9_0884WF90.90540Single bulged UX LSU rRNAU2428U2429C2430*G2441G2442cWWcWW
9 IL_3KTW_0103KTW0.89620Single bulged UC SRP RNAU178U179C180*G152G153ncSHcWWncWW
10 IL_8K85_0058K851.04600B+ARNA (56-MER)U30U31G32*C20G21cWWcWW
11 IL_8CRE_1378CRE0.80570Single bulged U (H)1 LSU rRNAU3346U3347G3348*C3289G3290cWWcWW
12 IL_8P9A_3588P9A0.70430Single bulged UAR LSU rRNAU3381U3382G3383*C3324G3325cWWcWW
13 IL_7KKV_0017KKV0.66120Single bulged UBOLE* RNAU497U498U499*A506G507cWWcWW
14 IL_2R8S_0042R8S0.59390Single bulged URP4-P6 RNA RIBOZYME DOMAING129U130U131*A192C193cWWcWW
15 IL_4O26_0014O260.58480Single bulged UETelomerase TRG181U182C183*G193C194cWWcWW
16 IL_2A64_0032A640.57750Single bulged UAribonuclease P RNAG66U67G68*C77C78cWWcWW
17 IL_6JQ6_0066JQ60.57460Single bulged UURNA (81-MER)A38U39C40*G55U56cWWcWW
18 IL_6JQ5_0036JQ50.55550Single bulged UARNA (82-MER)A38U39C40*G55U56cWWcWW
19 IL_6JQ5_0066JQ50.56310Single bulged UBRNA (82-MER)A38U39C40*G55U56cWWcWW
20 IL_5J7L_3315J7L0.59930Single bulged UDA LSU rRNAU2202U2203G2204*U2220G2221cWWcWW
21 IL_3TZR_0023TZR0.50380Single bulged UB+ARNA (16-mer)G105U106G107*U61C62cWWcWW
22 IL_8K85_0088K850.69770A+BRNA (56-MER)U30U31G32*C20G21cWWcWW
23 IL_8P9A_2538P9A0.77630Single bulged UAR LSU rRNAA775U776U777*A755U756cWWcWW
24 IL_8CRE_0278CRE0.77780Single bulged U (H)1 LSU rRNAA771U772U773*A751U752cWWcWW
25 IL_5J7L_3345J7L0.87190Single bulged UDA LSU rRNAU2401U2402C2403*G2414G2415cWWcWW
26 IL_8P9A_3148P9A0.70430Single bulged UAR LSU rRNAC2204U2205G2206*C2237G2238cWWcWW
27 IL_6MWN_0066MWN0.67140Single bulged UB IRESU659U660C661*G646A647cWWcWW
28 IL_4WF9_0304WF90.72600Single bulged UX LSU rRNAA969U970U971*A897U898cWWcWW
29 IL_2ZY6_0022ZY60.84420Single bulged UAphenylalanyl transfer RNAG10U11G12*C24C25cWWcWW
30 IL_8TQX_0028TQX0.78910Single bulged UA+DZika virus stem-loop A (SLA) bottom stemG14U15A16*U4C5cWWcWW
31 IL_2UWM_0032UWM0.82090Single bulged UDRNA (23-mer)C25U26G27*C21G22cWWcWW
32 IL_8CRE_0688CRE0.63540Single bulged U (H)1 LSU rRNAG1556U1557G1558*C1573C1574cWWcWW
33 IL_6M0X_0026M0X0.75590Single bulged UBRNA (71-MER)A59U60G61*C55U56cWWcWW
34 IL_6JDV_0036JDV0.83970Single bulged UBsgRNAG95U96G97*C81C82cWWcWW
35 IL_6UFG_0046UFG0.56250Single bulged UARNA (166-MER)U138U139C140*G153G154cWWcWW
36 IL_6UFH_0046UFH0.46920Single bulged UARNA (167-MER)U139U140C141*G154G155cWWcWW
37 IL_2A64_0022A640.39420Single bulged UAribonuclease P RNAG51U52C53*G395C396cWWcWW
38 IL_6LT7_0016LT70.33300Single bulged UC50-mer RNAG46U47U48*A41C42cWWcWW
39 IL_8P9A_3728P9A0.30880Single bulged UAT 5.8S rRNAA89U90C91*G68U69cWWcWW
40 IL_8TQX_0018TQX0.48400Single bulged UD+AZika virus stem-loop A (SLA) bottom stemG14U15A16*U4C5cWWcWW
41 IL_3CUL_0073CUL0.60760Single bulged UCRNA (92-MER)U17U18C19*GTP1G2cWWcWW
42 IL_8CRE_1408CRE0.49750Single bulged U (H)1 LSU rRNAG3305U3306A3307*U3328C3329cWWcWW
43 IL_8P9A_3618P9A0.54850Single bulged UAR LSU rRNAG3340U3341A3342*U3363C3364cWWcWW
44 IL_3WBM_0013WBM0.51510Single bulged UX+YRNA (25-MER)G2U3A4*U23C24cWWcWW
45 IL_7KVT_0027KVT0.36350Single bulged UBSquash RNA aptamer bound to DFHBI-1T with iridium (III) ionsG50U51A52*U66C67cWWcWW
46 IL_3NDB_0053NDB0.55800Single bulged UM SRP RNAC139U140C141*G237G238cWWcWW
47 IL_8CRE_0038CRE0.40660Single bulged U (H)1+4 LSU rRNA + 5.8S rRNAA12U13C14*G144U145cWWcWW
48 IL_8P9A_2328P9A0.41250Single bulged UAR+AT LSU rRNA + 5.8S rRNAA13U14C15*G144U145cWWcWW
49 IL_8F5G_0018F5G0.47180Single bulged UDRNAA5U6C7*G21U22cWWcWW
50 IL_4FRG_0024FRG0.50250Single bulged UBcobalamin riboswitch aptamer domainG23U24G25*C39C40cWWcWW
51 IL_8P9A_4278P9A0.38100Single bulged UsR SSU rRNAG1051U1052G1053*C1066C1067cWWcWW
52 IL_9DFE_0809DFE0.33920Single bulged U1A LSU rRNAG2067U2068G2069*C2442C2443cWWcWW
53 IL_5J7L_3885J7L0.40340Single bulged UDA LSU rRNAG2067U2068G7M2069*C2442C2443cWWcWW
54 IL_7A0S_0757A0S0.40390Single bulged UX LSU rRNAG2050U2051G2052*C2421C2422cWWcWW
55 IL_4WF9_0804WF90.41720Single bulged UX LSU rRNAG2094U2095G2096*C2469C2470cWWcWW
56 IL_4V9F_0744V9F0.44510Single bulged U0 LSU rRNAA2108U2109G2110*C2477U2478cWWcWW
57 IL_8P9A_3218P9A0.33750Single bulged UAR LSU rRNAG2409U2410U2411*A2811C2812cWWcWW
58 IL_8CRE_0988CRE0.33060Single bulged U (H)1 LSU rRNAG2387U2388U2389*A2783C2784cWWcWW
59 IL_2PJP_0012PJP0.47470Single bulged UBSECIS RNAG16U17U18*A29C30cWWcWW
60 IL_2OIU_0032OIU0.45060Single bulged UQL1 Ribozyme RNA LigaseG18U19U20*A41C42cWWcWW
61 IL_6CZR_1266CZR0.40820Single bulged U1a SSU rRNAU363U364C365*G388A389cWWcWW
62 IL_5J7L_0175J7L0.36450Single bulged UAA SSU rRNAU367U368G369*C392A393cWWcWW
63 IL_3D2V_0013D2V0.40080Single bulged UATPP riboswitch (THI element)G73U74G75*C5C6cWWcWW
64 IL_4LFB_0144LFB0.39220Single bulged UA SSU rRNAU367U368C369*G392A393cWWcWW
65 IL_8P9A_3968P9A0.36600Single bulged UsR SSU rRNAU439U440A441*U463A464cWWcWW
66 IL_8CRE_4138CRE0.37200Single bulged U (H)CM SSU rRNAU437U438A439*U461A462cWWcWW
67 IL_7PMM_0027PMM0.69250Single bulged UDRNA (45mer) containing HP92 of the 23S rRNAA15U16A17*U31U32cWWcWW
68 IL_7PMQ_0027PMQ0.54500Single bulged UFRNA (42-MER)A24U25A26*U40U41cWWcWW
69 IL_4V9F_1074V9F0.42270Single bulged U9 5S rRNAG86U87G88*C95C96cWWcWW
70 IL_4LFB_0424LFB0.51090Single bulged UA SSU rRNAG1048U1049G1050*C1208C1209cWWcWW
71 IL_5J7L_0465J7L0.47290Single bulged UAA SSU rRNAG1048U1049G1050*C1208C1209cWWcWW
72 IL_8P9A_4378P9A0.49020Single bulged UsR SSU rRNAG1268U1269G1270*C1440C1441cWWcWW
73 IL_8CRE_4518CRE0.47590Single bulged U (H)CM SSU rRNAG1253U1254G1255*C1426C1427cWWcWW
74 IL_3MEI_0013MEI0.38710Single bulged UB+ARNA (23-mer)C15U16G17*C7G8cWWcWW
75 IL_7VTI_0047VTI0.39090Single bulged UBcrRNAG21U22G23*C14C15cWWcWW
76 IL_8P9A_2818P9A0.36660Single bulged UAR LSU rRNAG1207U1208G1209*C1296C1297cWWcWW
77 IL_8CRE_0568CRE0.33430Single bulged U (H)1 LSU rRNAG1203U1204G1205*C1292C1293cWWcWW
78 IL_2PN3_0032PN30.49510Single bulged UB+ARNA (20-mer)G105U106G107*U61C62cWWcWW
79 IL_8P9A_4038P9A0.23690Single bulged UsR SSU rRNAG557U558C559*G586C587cWWcWW
80 IL_8CRE_4228CRE0.00000Single bulged U (H)CM SSU rRNAG555U556C557*G584C585cWWcWW
81 IL_4LFB_0464LFB0.49880Single bulged UA SSU rRNAC1195U1196G1197*C1060G1061cWWcWW
82 IL_6CZR_1566CZR0.49890Single bulged U1a SSU rRNAC1177U1178G1179*C1043G1044cWWcWW
83 IL_8P9A_4588P9A0.60600Single bulged UsR SSU rRNAU1656U1657G1658*U1743A1744cWWcWW
84 IL_8CRE_4728CRE0.60530Single bulged U (H)CM SSU rRNAU1643U1644G1645*U1730A1731cWWcWW
85 IL_8P9A_3578P9A0.49860Single bulged UAR LSU rRNAG3318U3319A3320*U3387C3388cWWcWW
86 IL_5J7L_2985J7L0.49760Single bulged UDA LSU rRNAG1459U1460C1461*G1450C1451cWWcWW
87 IL_8CRE_1368CRE0.50830Single bulged U (H)1 LSU rRNAG3283U3284A3285*U3352C3353cWWcWW
88 IL_8VMA_0028VMA0.71850Single bulged UCRNA (88-MER)G40U41G42*C36C37cWWcWW
89 IL_8VMB_0018VMB0.56640Single bulged URRNA (83-MER)G40U41G42*C36C37cWWcWW
90 IL_4WF9_0384WF90.47440Single bulged UX LSU rRNAA1055U1056A1057*U1193U1194cWWcWW
91 IL_5J7L_2795J7L0.42090Single bulged UDA LSU rRNAG1011U1012C1013*G1149C1150cWWcWW
92 IL_9DFE_0379DFE0.38700Single bulged U1A LSU rRNAG1011U1012C1013*G1149C1150cWWcWW
93 IL_8CRE_0538CRE0.39680Single bulged U (H)1 LSU rRNAA1176U1177G1178*C1320U1321cWWcWW
94 IL_4V9F_0394V9F0.39320Single bulged U0 LSU rRNAG1108U1109G1110*C1253C1254cWWcWW
95 IL_8P9A_2788P9A0.53510Single bulged UAR LSU rRNAA1180U1181A1182*U1324U1325cWWcWW
96 IL_7A0S_0357A0S0.60250Single bulged UX LSU rRNAA1022U1023G1024*C1160U1161cWWcWW
97 IL_3SNP_0043SNP0.61990Single bulged UDferritin H IRE RNAG18U19U20*A13C14cWWcWW
98 IL_8KAL_0038KAL0.72330Single bulged UARNA (98-MER)G58U59C60*G54C55cWWncWW
99 IL_8KAJ_0038KAJ0.77230IRNA (65-MER)G58U59C60*G54C55cWWcWW
100 IL_5VW1_0025VW10.75060Single bulged UCsgRNAG58U59C60*G54C55cWWcWW
101 IL_4ZT0_0044ZT00.72920Single bulged UDsingle-guide RNAG58U59C60*G54C55cWWcWW
102 IL_7QR8_0027QR80.72980Single bulged UAPTPRC sgRNAG58U59C60*G54C55cWWcWW
103 IL_7Z4D_0027Z4D0.72930Single bulged UAsgRNAG58U59C60*G54C55cWWcWW
104 IL_7QQP_0027QQP0.72830Single bulged UAAAVS1 sgRNAG58U59C60*G54C55cWWcWW
105 IL_7ZO1_0027ZO10.74640Single bulged UACD34 sgRNAG58U59C60*G54C55cWWcWW
106 IL_7QQX_0027QQX0.73090Single bulged UAFANCF sgRNAG58U59C60*G54C55cWWcWW
107 IL_7QR0_0027QR00.73520Single bulged UATRAC sgRNAG58U59C60*G54C55cWWcWW
108 IL_5B2T_0025B2T0.73380Single bulged UAGuide RNAG58U59C60*G54C55cWWcWW
109 IL_5FQ5_0025FQ50.72750Single bulged UASGRNAG58U59C60*G54C55cWWcWW
110 IL_6K4Q_0026K4Q0.75090AsgRNAG58U59C60*G54C55cWWcWW
111 IL_5F9R_0035F9R0.79440Single bulged UARNA (116-MER)G76U77C78*G72C73cWWcWW
112 IL_8CRE_4078CRE0.76940Single bulged U (H)CM SSU rRNAG277U278G279*C273C274cWWcWW
113 IL_8P9A_3908P9A0.98630Single bulged UsR SSU rRNAG279U280G281*C275C276cWWcWW
114 IL_8P9A_2608P9A0.64760Single bulged UAR LSU rRNAC873U874G875*C886G887cWWcWW
115 IL_8CRE_0358CRE0.64600Single bulged U (H)1 LSU rRNAC869U870G871*C882G883cWWcWW
116 IL_4V9F_0294V9F0.61950Single bulged U0 LSU rRNAG834U835G836*C847C848cWWcWW
117 IL_8CRE_0138CRE0.63030Single bulged U (H)1 LSU rRNAG188U189U190*A203C204cWWcWW
118 IL_8P9A_2418P9A0.62810Single bulged UAR LSU rRNAG189U190U191*A204C205cWWcWW
119 IL_4V9F_0134V9F0.58090Single bulged U0 LSU rRNAG307U308C309*G322C323cWWcWW
120 IL_1ET4_0021ET41.01280Major groove intercalationARNA APTAMER, 35-MERG226U227G228*C218C219cWWcWW
121 IL_5LYS_0085LYS1.23290Single bulged UB7SK RNAC62U63G64*C45G46cWWcWW
122 IL_3MXH_0033MXH1.45760Major groove intercalationRc-di-GMP riboswitchC52U53C54*G86G87cWWcWW
123 IL_3IWN_0033IWN1.45550Major groove intercalationAC-di-GMP riboswitchC42U43C44*G81G82cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUG*CC26
GUC*GC22
GUU*AC10
GUA*UC9
CUG*CG9
AUC*GU7
AUG*CU6
UUC*GG5
UUC*GA4
UUG*CG4
AUA*UU4
AUU*AU3
CUC*GG3
GUG*UC2
UUA*UA2
UUG*UA2
UUU*AG1
UUG*UG1
UUC*(GTP)G1
GU(G7M)*CC1
UUG*CA1
Non-Watson-Crick part of the motif
SequenceCounts
U*123

Release history

Release3.95
Date2025-03-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single bulged U (100)
  • Single bulged U (H) (16)
  • (4)
  • Major groove intercalation (3)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.03 | Avg 0.83 | Max 2.05
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