IL_1N33_060
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N33_060 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1992
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
1N33|1|A|G|1401
1N33|1|A|C|1402
1N33|1|A|C|1403
1N33|1|A|C|1404
*
1N33|1|A|G|1497
1N33|1|A|U|1498
1N33|1|A|A|1499
1N33|1|A|A|1500
1N33|1|A|C|1501
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain Z
- A-SITE MESSENGER RNA FRAGMENT
Coloring options: