IL_1N33_062

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N33_062 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.159

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

1N33|1|A|C|1407
1N33|1|A|A|1408
1N33|1|A|C|1409
*
1N33|1|A|G|1491
1N33|1|A|A|1492
1N33|1|A|A|1493
1N33|1|A|G|1494

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain Y

ANTICODON STEM-LOOP OF SER TRANSFER RNA

Chain Z

A-SITE MESSENGER RNA FRAGMENT