IL_1N33_065
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GCG*CGU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N33_065 not in the Motif Atlas
- Geometric match to IL_1SI2_002
- Geometric discrepancy: 0.1938
- The information below is about IL_1SI2_002
- Detailed Annotation
- Isolated non-canonical cWW contact
- Broad Annotation
- No text annotation
- Motif group
- IL_23751.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
1N33|1|A|G|1419
1N33|1|A|C|1420
1N33|1|A|G|1421
*
1N33|1|A|C|1479
1N33|1|A|G|1480
1N33|1|A|U|1481
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
No other chains within 10ÅColoring options: