3D structure

PDB id
1N33 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
GGA*UUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

1N33|1|Y|G|34
1N33|1|Y|G|35
1N33|1|Y|A|36
*
1N33|1|Z|U|1
1N33|1|Z|U|2
1N33|1|Z|U|3

Current chains

Chain Y
ANTICODON STEM-LOOP OF SER TRANSFER RNA
Chain Z
A-SITE MESSENGER RNA FRAGMENT

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:

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