IL_1N34_008
3D structure
- PDB id
- 1N34 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAC*GGC
- Length
- 8 nucleotides
- Bulged bases
- 1N34|1|A|G|129|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N34_008 not in the Motif Atlas
- Homologous match to IL_5J7L_009
- Geometric discrepancy: 0.4235
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
1N34|1|A|G|128
1N34|1|A|U|129
1N34|1|A|G|129|||A
1N34|1|A|A|130
1N34|1|A|C|131
*
1N34|1|A|G|231
1N34|1|A|G|232
1N34|1|A|C|233
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain P
- 30S RIBOSOMAL PROTEIN S16
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
- Chain T
- 30S RIBOSOMAL PROTEIN S20
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