Motif IL_57744.1 Version IL_57744.1 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5ZTM_001 | 5ZTM | 0.4387 | 0 | Isolated non-canonical cWW pair | C | non-coding mRNA sequence roX2 | C | 162 | C | 163 | G | 164 | * | U | 118 | A | 119 | G | 120 | cWW | ncWW | cWW |
| 2 | IL_5UNE_004 | 5UNE | 0.3037 | 0 | Isolated non-canonical cWW pair | B+A | RNA (47-MER) | C | 27 | A | 28 | G | 29 | * | U | 16 | A | 17 | G | 18 | cWW | cwW | cWW |
| 3 | IL_6WBR_001 | 6WBR | 0.2311 | 0 | Isolated non-canonical cWW pair | B | RNA (94-MER) | G | 26 | G | 27 | A | 28 | * | U | 41 | A | 42 | C | 43 | cWW | cWW | |
| 4 | IL_8P9A_418 | 8P9A | 0.2216 | 1 | Isolated non-canonical cWW pair | sR | SSU rRNA | G | 957 | U | 958 | U | 960 | * | G | 868 | A | 869 | C | 870 | cWW | ncWW | |
| 5 | IL_5T3K_001 | 5T3K | 0.0000 | 1 | Isolated non-canonical cWW pair | A+B | RNA (17-mer) + RNA (16-mer) | G | 7 | A | 8 | G | 10 | * | C | 26 | A | 27 | C | 28 | cWW | cwW | cWW |
| 6 | IL_3TD0_005 | 3TD0 | 0.1602 | 1 | Isolated non-canonical cWW pair | A+B | RNA (23-mer) | G | 16 | A | 17 | G | 19 | * | C | 30 | G | 31 | C | 32 | cWW | cWW | cWW |
| 7 | IL_3TD0_002 | 3TD0 | 0.1982 | 1 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 39 | A | 40 | G | 42 | * | C | 7 | G | 8 | C | 9 | cWW | cWW | cWW |
| 8 | IL_7LYF_004 | 7LYF | 0.3246 | 1 | Isolated non-canonical cWW pair | A | Dengue virus SLA | C | 51 | G | 52 | C | 54 | * | G | 70 | A | 71 | G | 72 | cWW | cWW | cWW |
| 9 | IL_7QR8_008 | 7QR8 | 0.2804 | 0 | C+A | PTPRC off-target1 target strand | DT | 14 | DA | 15 | DT | 16 | * | A | 4 | A | 5 | A | 6 | cWW | ncwW | cWW | |
| 10 | IL_7D7V_003 | 7D7V | 0.3735 | 1 | A | nadA RNA | C | 41 | A | 42 | U | 44 | * | G | 22 | G | 23 | G | 24 | cWW | cWW | cWW | |
| 11 | IL_7D7W_003 | 7D7W | 0.4482 | 1 | A | 18GAAA (52-MER) | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW | |
| 12 | IL_6TFF_003 | 6TFF | 0.3370 | 1 | A | nadA RNA | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW | |
| 13 | IL_4K31_002 | 4K31 | 0.3399 | 1 | Isolated non-canonical cWW pair | C+B | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW |
| 14 | IL_4K31_003 | 4K31 | 0.3546 | 1 | Isolated non-canonical cWW pair | B+C | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW |
| 15 | IL_4WF9_041 | 4WF9 | 0.4039 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1075 | A | 1076 | G | 1078 | * | C | 1165 | G | 1166 | C | 1167 | cWW | ncWW | cWW |
| 16 | IL_7A0S_038 | 7A0S | 0.4249 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1042 | A | 1043 | G | 1045 | * | C | 1132 | G | 1133 | C | 1134 | cWW | ncWW | cWW |
| 17 | IL_5J7L_282 | 5J7L | 0.3987 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW |
| 18 | IL_9DFE_040 | 9DFE | 0.3863 | 1 | 1A | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 19 | IL_4RUM_001 | 4RUM | 0.2979 | 1 | Isolated non-canonical cWW pair | A | NiCo riboswitch RNA | G | 13 | A | 14 | C | 16 | * | G | 88 | A | 89 | C | 90 | cWW | cwW | cWW |
| 20 | IL_2QEK_001 | 2QEK | 0.3111 | 1 | A+B | HIV-1 subtype F DIS genomic RNA | G | 7 | A | 8 | G | 10 | * | C | 15 | A | 16 | C | 17 | cWW | cwW | cWW | |
| 21 | IL_1U6B_001 | 1U6B | 0.3005 | 1 | Isolated non-canonical cWW pair | B | 197-MER | G | 19 | C | 20 | G | 22 | * | C | 29 | A | 30 | C | 31 | cWW | ncWW | cWW |
| 22 | IL_5J7L_009 | 5J7L | 0.3449 | 1 | Isolated non-canonical cWW pair | AA | SSU rRNA | G | 128 | A | 129 | A | 131 | * | U | 231 | G | 232 | C | 233 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUG*CGC | 4 |
| GAAG*CAC | 2 |
| GAAG*CGC | 2 |
| CAGC*GGG | 2 |
| AAAG*CGU | 2 |
| CCG*UAG | 1 |
| CAG*UAG | 1 |
| GGA*UAC | 1 |
| GUUU*GAC | 1 |
| CGAC*GAG | 1 |
| TAT*AAA | 1 |
| CAGU*GGG | 1 |
| GAGC*GAC | 1 |
| GCCG*CAC | 1 |
| GAAA*UGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*G | 5 |
| AU*G | 4 |
| AG*G | 3 |
| A*A | 2 |
| AA*A | 2 |
| C*A | 1 |
| G*A | 1 |
| UU*A | 1 |
| GA*A | 1 |
| AG*A | 1 |
| CC*A | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (16)
- (6)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.37 | Max 0.70
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