IL_1N34_025
3D structure
- PDB id
- 1N34 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N34_025 not in the Motif Atlas
- Homologous match to IL_4LFB_022
- Geometric discrepancy: 0.1507
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
1N34|1|A|C|569
1N34|1|A|G|570
1N34|1|A|U|571
1N34|1|A|A|572
1N34|1|A|A|573
1N34|1|A|A|574
1N34|1|A|G|575
*
1N34|1|A|C|880
1N34|1|A|G|881
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain E
- 30S RIBOSOMAL PROTEIN S5
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
Coloring options: