IL_1N34_054

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N34_054 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2479

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

1N34|1|A|C|1263
1N34|1|A|C|1264
1N34|1|A|G|1265
*
1N34|1|A|C|1270
1N34|1|A|G|1271
1N34|1|A|G|1272

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain S

30S RIBOSOMAL PROTEIN S19

Chain V

30S RIBOSOMAL PROTEIN THX