IL_1N36_047

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCCA*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCCA,UGGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N36_047 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.1795

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1N36|1|A|C|1242
1N36|1|A|C|1243
1N36|1|A|C|1244
1N36|1|A|A|1245
*
1N36|1|A|U|1292
1N36|1|A|G|1293
1N36|1|A|G|1294
1N36|1|A|G|1295

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9

Chain M

30S RIBOSOMAL PROTEIN S13

Chain V

30S RIBOSOMAL PROTEIN THX