IL_1N36_050

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GCCAC*GGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N36_050 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.3724

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1N36|1|A|G|1258
1N36|1|A|C|1259
1N36|1|A|C|1260
1N36|1|A|A|1261
1N36|1|A|C|1262
*
1N36|1|A|G|1273
1N36|1|A|G|1274
1N36|1|A|A|1275
1N36|1|A|G|1276
1N36|1|A|C|1277

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain J

30S RIBOSOMAL PROTEIN S10

Chain N

30S RIBOSOMAL PROTEIN S14

Chain V

30S RIBOSOMAL PROTEIN THX