IL_1N36_085

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N36_085 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.209

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1N36|1|A|U|249
1N36|1|A|A|250
1N36|1|A|G|251
1N36|1|A|U|252
*
1N36|1|A|A|274
1N36|1|A|G|275

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17