IL_1N36_088

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N36_088 not in the Motif Atlas

Homologous match to IL_5J7L_042

Geometric discrepancy: 0.2034

The information below is about IL_5J7L_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1N36|1|A|G|953
1N36|1|A|G|954
*
1N36|1|A|C|1226
1N36|1|A|A|1227
1N36|1|A|C|1228

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain M

30S RIBOSOMAL PROTEIN S13

Chain S

30S RIBOSOMAL PROTEIN S19