IL_1N36_091

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCAGCG*CGG

Length

9 nucleotides

Bulged bases

1N36|1|A|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N36_091 not in the Motif Atlas

Homologous match to IL_6CZR_366

Geometric discrepancy: 0.5107

The information below is about IL_6CZR_366

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1N36|1|A|C|1128
1N36|1|A|C|1129
1N36|1|A|A|1130
1N36|1|A|G|1131
1N36|1|A|C|1132
1N36|1|A|G|1133
*
1N36|1|A|C|1141
1N36|1|A|G|1142
1N36|1|A|G|1143

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10