IL_1N8R_013

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N8R_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.043

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1N8R|1|A|C|290
1N8R|1|A|C|291
1N8R|1|A|G|292
1N8R|1|A|A|293
1N8R|1|A|C|294
1N8R|1|A|C|295
1N8R|1|A|G|296
*
1N8R|1|A|C|355
1N8R|1|A|C|356
1N8R|1|A|A|357
1N8R|1|A|G|358
1N8R|1|A|U|359
1N8R|1|A|A|360
1N8R|1|A|C|361
1N8R|1|A|G|362

Current chains

Chain A

23S ribosomal RNA

Nearby chains