IL_1N8R_034
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N8R_034 not in the Motif Atlas
- Geometric match to IL_4V9F_033
- Geometric discrepancy: 0.0357
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1N8R|1|A|G|952
1N8R|1|A|G|953
1N8R|1|A|U|954
1N8R|1|A|A|955
1N8R|1|A|G|956
*
1N8R|1|A|C|1011
1N8R|1|A|A|1012
1N8R|1|A|A|1013
1N8R|1|A|A|1014
1N8R|1|A|C|1015
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain J
- 50S ribosomal protein L10e
- Chain O
- 50S ribosomal protein L18P
- Chain R
- 50S ribosomal protein L21e
- Chain X
- 50S ribosomal protein L30P
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