IL_1N8R_057

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

1N8R|1|A|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N8R_057 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0339

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1N8R|1|A|C|1578
1N8R|1|A|C|1579
1N8R|1|A|A|1580
1N8R|1|A|A|1581
1N8R|1|A|C|1582
1N8R|1|A|U|1583
*
1N8R|1|A|A|1612
1N8R|1|A|C|1613
1N8R|1|A|G|1614
1N8R|1|A|A|1615
1N8R|1|A|A|1616
1N8R|1|A|C|1617
1N8R|1|A|G|1618

Current chains

Chain A

23S ribosomal RNA

Nearby chains