IL_1N8R_058
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGGAAG*CAGGAAG
- Length
- 13 nucleotides
- Bulged bases
- 1N8R|1|A|G|1604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N8R_058 not in the Motif Atlas
- Homologous match to IL_4V9F_058
- Geometric discrepancy: 0.0507
- The information below is about IL_4V9F_058
- Detailed Annotation
- Kink-turn
- Broad Annotation
- Kink-turn
- Motif group
- IL_32016.1
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
1N8R|1|A|U|1587
1N8R|1|A|G|1588
1N8R|1|A|G|1589
1N8R|1|A|A|1590
1N8R|1|A|A|1591
1N8R|1|A|G|1592
*
1N8R|1|A|C|1602
1N8R|1|A|A|1603
1N8R|1|A|G|1604
1N8R|1|A|G|1605
1N8R|1|A|A|1606
1N8R|1|A|A|1607
1N8R|1|A|G|1608
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37AE
- Chain Q
- 50S ribosomal protein L19E
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