IL_1N8R_059
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGCAAC*GGC
- Length
- 10 nucleotides
- Bulged bases
- 1N8R|1|A|G|1730
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N8R_059 not in the Motif Atlas
- Homologous match to IL_4V9F_059
- Geometric discrepancy: 0.0371
- The information below is about IL_4V9F_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.5
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
1N8R|1|A|G|1728
1N8R|1|A|A|1729
1N8R|1|A|G|1730
1N8R|1|A|C|1731
1N8R|1|A|A|1732
1N8R|1|A|A|1733
1N8R|1|A|C|1734
*
1N8R|1|A|G|2045
1N8R|1|A|G|2046
1N8R|1|A|C|2047
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3P
- Chain S
- 50S ribosomal protein L22P
- Chain Y
- 50S ribosomal protein L31E
Coloring options: