IL_1N8R_100
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUUGCCU*AUAAGC
- Length
- 14 nucleotides
- Bulged bases
- 1N8R|1|B|U|3023
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N8R_100 not in the Motif Atlas
- Homologous match to IL_4V9F_102
- Geometric discrepancy: 0.2639
- The information below is about IL_4V9F_102
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_67623.1
- Basepair signature
- cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1N8R|1|B|G|3021
1N8R|1|B|G|3022
1N8R|1|B|U|3023
1N8R|1|B|U|3024
1N8R|1|B|G|3025
1N8R|1|B|C|3026
1N8R|1|B|C|3027
1N8R|1|B|U|3028
*
1N8R|1|B|A|3054
1N8R|1|B|U|3055
1N8R|1|B|A|3056
1N8R|1|B|A|3057
1N8R|1|B|G|3058
1N8R|1|B|C|3059
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L5P
- Chain O
- 50S ribosomal protein L18P
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