IL_1N8R_102

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UACCC*GAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N8R_102 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.0533

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

1N8R|1|B|U|3033
1N8R|1|B|A|3034
1N8R|1|B|C|3035
1N8R|1|B|C|3036
1N8R|1|B|C|3037
*
1N8R|1|B|G|3043
1N8R|1|B|A|3044
1N8R|1|B|A|3045
1N8R|1|B|C|3046
1N8R|1|B|A|3047

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5P

Chain O

50S ribosomal protein L18P