IL_1NBR_042

3D structure

PDB id

1NBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Iron Responsive Element RNA Hairpin, NMR, 15 Structures

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCU*AC

Length

5 nucleotides

Bulged bases

1NBR|11|A|C|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NBR_042 not in the Motif Atlas

Geometric match to IL_9DFE_107

Geometric discrepancy: 0.3105

The information below is about IL_9DFE_107

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

1NBR|11|A|G|6
1NBR|11|A|C|7
1NBR|11|A|U|8
*
1NBR|11|A|A|23
1NBR|11|A|C|24

Current chains

Chain A

RNA HAIRPIN

Nearby chains