IL_1NC0_005

3D structure

PDB id

1NC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NC0_005 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.3356

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

1NC0|5|A|C|6
1NC0|5|A|C|7
*
1NC0|5|A|G|17
1NC0|5|A|A|18
1NC0|5|A|G|19

Current chains

Chain A

U80G U6 RNA Intramolecular Stem-Loop

Nearby chains