IL_1NJI_063
3D structure
- PDB id
- 1NJI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of chloramphenicol bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGUACC*GAAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 1NJI|1|A|G|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NJI_063 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0323
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
1NJI|1|A|C|1764
1NJI|1|A|G|1765
1NJI|1|A|U|1766
1NJI|1|A|A|1767
1NJI|1|A|C|1768
1NJI|1|A|C|1769
*
1NJI|1|A|G|1774
1NJI|1|A|A|1775
1NJI|1|A|A|1776
1NJI|1|A|G|1777
1NJI|1|A|A|1778
1NJI|1|A|A|1779
1NJI|1|A|G|1780
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37AE
- Chain Q
- 50S ribosomal protein L19E
Coloring options: