IL_1NJI_071

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1NJI|1|A|G|1979, 1NJI|1|A|U|1985, 1NJI|1|A|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJI_071 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.031

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1NJI|1|A|C|1975
1NJI|1|A|G|1976
1NJI|1|A|U|1977
1NJI|1|A|A|1978
1NJI|1|A|G|1979
1NJI|1|A|U|1980
1NJI|1|A|A|1981
1NJI|1|A|C|1982
1NJI|1|A|C|1983
1NJI|1|A|U|1984
1NJI|1|A|U|1985
1NJI|1|A|G|1986
*
1NJI|1|A|C|2002
1NJI|1|A|U|2003
1NJI|1|A|U|2004
1NJI|1|A|G|2005

Current chains

Chain A

23S ribosomal RNA

Nearby chains