IL_1NJI_078
3D structure
- PDB id
- 1NJI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of chloramphenicol bound to the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAG*CGAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1NJI_078 not in the Motif Atlas
- Geometric match to IL_4V9F_080
- Geometric discrepancy: 0.0359
- The information below is about IL_4V9F_080
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
1NJI|1|A|C|2331
1NJI|1|A|A|2332
1NJI|1|A|G|2333
*
1NJI|1|A|C|2351
1NJI|1|A|G|2352
1NJI|1|A|A|2353
1NJI|1|A|A|2354
1NJI|1|A|G|2355
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5P
- Chain O
- 50S ribosomal protein L18P
- Chain R
- 50S ribosomal protein L21e
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