IL_1NJM_007

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_007 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2394

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1NJM|1|0|G|165
1NJM|1|0|G|166
1NJM|1|0|A|167
1NJM|1|0|A|168
1NJM|1|0|C|169
1NJM|1|0|U|170
1NJM|1|0|G|171
*
1NJM|1|0|C|178
1NJM|1|0|U|179
1NJM|1|0|C|180
1NJM|1|0|A|181
1NJM|1|0|G|182
1NJM|1|0|U|183
1NJM|1|0|A|184
1NJM|1|0|C|185

Current chains

Chain 0

23S ribosomal RNA

Nearby chains