IL_1NJM_009

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.27

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1NJM|1|0|G|215
1NJM|1|0|U|216
1NJM|1|0|U|217
1NJM|1|0|A|218
1NJM|1|0|G|219
1NJM|1|0|U|220
1NJM|1|0|A|221
1NJM|1|0|G|222
*
1NJM|1|0|C|230
1NJM|1|0|G|231
1NJM|1|0|A|232
1NJM|1|0|A|233
1NJM|1|0|C|234
1NJM|1|0|C|235
1NJM|1|0|C|236

Current chains

Chain 0

23S ribosomal RNA

Nearby chains