IL_1NJM_022

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_022 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.2056

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1NJM|1|0|U|716
1NJM|1|0|G|717
1NJM|1|0|A|718
1NJM|1|0|A|719
1NJM|1|0|A|720
1NJM|1|0|C|721
*
1NJM|1|0|G|736
1NJM|1|0|C|737
1NJM|1|0|G|738
1NJM|1|0|G|739
1NJM|1|0|A|740
1NJM|1|0|G|741

Current chains

Chain 0

23S ribosomal RNA

Nearby chains