IL_1NJM_037

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

1NJM|1|0|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_037 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.1741

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

1NJM|1|0|C|1009
1NJM|1|0|U|1010
1NJM|1|0|A|1011
1NJM|1|0|A|1012
1NJM|1|0|G|1013
*
1NJM|1|0|C|1164
1NJM|1|0|G|1165
1NJM|1|0|A|1166
1NJM|1|0|A|1167
1NJM|1|0|G|1168

Current chains

Chain 0

23S ribosomal RNA

Nearby chains