IL_1NJM_038

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_038 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.3692

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

1NJM|1|0|U|1015
1NJM|1|0|C|1016
1NJM|1|0|C|1017
1NJM|1|0|C|1018
1NJM|1|0|U|1019
1NJM|1|0|A|1020
1NJM|1|0|A|1021
1NJM|1|0|A|1022
*
1NJM|1|0|U|1161
1NJM|1|0|A|1162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains