IL_1NJM_051

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1NJM|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_051 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.2731

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

1NJM|1|0|C|1221
1NJM|1|0|G|1222
1NJM|1|0|G|1223
1NJM|1|0|A|1224
1NJM|1|0|G|1225
1NJM|1|0|A|1226
1NJM|1|0|A|1227
1NJM|1|0|G|1228
*
1NJM|1|0|U|1247
1NJM|1|0|G|1248
1NJM|1|0|G|1249
1NJM|1|0|A|1250
1NJM|1|0|G|1251

Current chains

Chain 0

23S ribosomal RNA

Nearby chains