IL_70923.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12	1-12	2-3	2-11	4-5	4-11	5-9	5-10	5-12	6-9	6-10	7-8	10-11	11-12
1	IL_5J7L_330	5J7L	0.5004	1	Kink-turn	DA	LSU rRNA	C	2129	U	2130	U	2131	G	2133	A	2134	A	2135	G	2136	*	U	2155	G	2156	G	2157	A	2158	G	2159	cWW				ncSW			tSS			cWW
2	IL_7A0S_043	7A0S	0.1498	1	Kink-turn	X	LSU rRNA	C	1221	G	1222	G	1223	G	1225	A	1226	A	1227	G	1228	*	U	1247	G	1248	G	1249	A	1250	G	1251	cWW				tSH		ntHS		tHS		cWW
3	IL_4WF9_046	4WF9	0.0000	1	Kink-turn	X	LSU rRNA	C	1246	G	1247	U	1248	G	1250	A	1251	A	1252	G	1253	*	U	1272	G	1273	G	1274	A	1275	G	1276	cWW		ntSH		ntSW		tHS		tHS		cWW
4	IL_8C3A_063	8C3A	0.1815	1		1	LSU rRNA	U	1384	G	1385	A	1386	G	1388	A	1389	A	1390	G	1391	*	U	1411	C	1412	G	1413	A	1414	A	1415	cWW	ncSS			tSH		tHS		tHS	ntHS	cWW
5	IL_5TBW_059	5TBW	0.1850	1	Kink-turn	1	LSU rRNA	U	1388	G	1389	A	1390	G	1392	A	1393	A	1394	G	1395	*	U	1415	C	1416	G	1417	A	1418	A	1419	cWW	ncSS	tSS		tSH		tHS		tHS		cWW
6	IL_3V7E_002	3V7E	0.1821	1	Kink-turn	C	SAM-I riboswitch	C	31	G	32	A	33	G	35	A	36	A	37	A	38	*	U	17	G	18	G	19	A	20	G	21	cWW		tSS		tSH	ntHS			tHS		cWW
7	IL_7EAG_005	7EAG	0.1715	1		F+E	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW		ntSS		tSH		tHS		tHS		cWW
8	IL_7EAG_003	7EAG	0.1547	1		D+C	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW		ntSS		tSH		tHS		tHS		cWW
9	IL_7EAG_004	7EAG	0.1699	1		E+F	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW	ncSS	ntSS		tSH		tHS		tHS		cWW
10	IL_7EAG_002	7EAG	0.1518	1		C+D	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW	ncSS	ntSS		tSH		tHS		tHS		cWW
11	IL_7EAG_001	7EAG	0.1506	1		A+B	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW		tSS		tSH		tHS		tHS		cWW
12	IL_4V9F_048	4V9F	0.1397	1	Kink-turn	0	LSU rRNA	G	1312	A	1313	U	1314	G	1316	A	1317	A	1318	G	1319	*	U	1338	G	1339	G	1340	A	1341	C	1342	cWW		tSS		tSH		tHS		tHS		cWW		ncSS
13	IL_5J7L_288	5J7L	0.1256	1	Kink-turn	DA	LSU rRNA	C	1208	U	1209	G	1210	G	1212	A	1213	A	1214	G	1215	*	U	1234	G	1235	G	1236	A	1237	G	1238	cWW		ntSS		tSH		tHS		tHS		cWW
14	IL_7RQB_047	7RQB	0.1241	1	Kink-turn	1A	LSU rRNA	C	1208	G	1209	A	1210	G	1212	A	1213	A	1214	G	1215	*	U	1234	G	1235	G	1236	A	1237	G	1238	cWW	ncSS			tSH		tHS		tHS		cWW
15	IL_3U4M_004	3U4M	0.1856	1	Kink-turn	B	LSU rRNA	C	2129	U	2130	G	2131	G	2133	A	2134	A	2135	C	2136	*	G	2155	G	2156	G	2157	A	2158	G	2159	cWW		ntSS		tSH		tHS		tHS		cWW
16	IL_5FJC_002	5FJC	0.2142	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33\|\|A	G	35	A	36	A	37	C	38	*	G	17	G	18	G	19	A	20	G	21	cWW		tSS		tSH		tHS		tHS		cWW
17	IL_5G4T_002	5G4T	0.1907	1	Kink-turn	A+B	HMKT-7	C	3	G	4	A	5	G	7	A	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW				tSH		tHS		tHS		cWW
18	IL_4CS1_002	4CS1	0.2244	1	Kink-turn	A	5'-(GPGPCPGPAPAPGPAPAPCPCPGPGPGP GPAPGPCP*CP)-3'	C	3\|\|\|\|9_769	G	4\|\|\|\|9_769	A	5\|\|\|\|9_769	G	7\|\|\|\|9_769	A	8\|\|\|\|9_769	A	9\|\|\|\|9_769	C	10\|\|\|\|9_769	*	G	13	G	14	G	15	A	16	G	17	cWW		ntSS		tSH		tHS		tHS		cWW
19	IL_7JRS_006	7JRS	0.3005	1		B	RNA 3D nanocage	C	77	G	78	A	79	G	81	A	82	A	83	C	84	*	G	55	G	56	G	57	A	58	G	59	cWW		ntSS		tSH		tHS		tHS		cWW
20	IL_4C4W_002	4C4W	0.3253	1	Kink-turn	H	TSKT-23	U	26	G	27	A	28	G	30	A	31	C	32	C	33	*	G	3	C	4	A	5	A	6	G	7	cWW		ntSS		tSH		tHS		ntHS		cWW
21	IL_4BW0_001	4BW0	0.3105	1	Kink-turn	A	HMKT-7	C	16	G	17	A	18	G	20	A	21	A	22	C	23	*	G	3	G	4	G	5	A	6	G	7	cWW		ntSS		tSH		tHS		tHS		cWW
22	IL_5FJ4_002	5FJ4	0.2520	1	Kink-turn	H	HMKT-7	C	26	G	27	A	28	G	30	A	31	A	32	C	33	*	G	3	G	4	G	5	A	6	G	7	cWW				tSH		tHS		tHS		cWW
23	IL_5Y7M_008	5Y7M	0.2773	1	Kink-turn	D	RNA (52-MER)	A	17	G	18	A	19	G	21	A	22	U	23	C	24	*	G	29	G	30	G	31	A	32	U	33	cWW	ncSS	tSS		tSH		tHS		ntHS		cWW		ncSS
24	IL_4KQY_002	4KQY	0.2930	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33	G	35	A	36	A	37	G	38	*	C	17	A	18	G	19	A	20	G	21	cWW	ncSS	ntSS	ncSH	tSH		tHS		ntHS		cWW
25	IL_7JRS_003	7JRS	0.3048	1		B	RNA 3D nanocage	C	12	G	13	A	14	G	16	A	17	A	18	C	19	*	G	120	G	121	G	122	A	123	G	124	cWW		ntSS		ntSH		tHS		tHS		cWW	ncSH
26	IL_7JRS_002	7JRS	0.2507	1		A	RNA 3D nanocage	C	77	G	78	A	79	G	81	A	82	A	83	C	84	*	G	55	G	56	G	57	A	58	G	59	cWW	ncSS			tSH		tHS		tHS		cWW
27	IL_7JRR_001	7JRR	0.2659	1		A	RNA (50-MER)	C	23	G	24	A	25	G	27	A	28	A	29	C	30	*	G	5	G	6	G	7	A	8	G	9	cWW		ntSS		tSH		tHS		tHS		cWW
28	IL_4V9F_004	4V9F	0.4682	1	Kink-turn	0	LSU rRNA	C	93	G	94	A	95	G	97	A	98	A	99	C	100	*	G	77	G	78	G	79	A	80	G	81	cWW	ncSS	ntSS		tSH		tHS	tSS	tHS		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAGAAC*GGGAG	10
CUAUGAAG*UGGAG	5
UGACGAAG*UCGAA	2
CUUUGAAG*UGGAG	1
CGGAGAAG*UGGAG	1
CGUUGAAG*UGGAG	1
CGAUGAAA*UGGAG	1
GAUGGAAG*UGGAC	1
CUGCGAAG*UGGAG	1
CGAUGAAG*UGGAG	1
CUGUGAAC*GGGAG	1
UGAUGACC*GCAAG	1
AGACGAUC*GGGAU	1
CGACGAAG*CAGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAGAA*GGA	10
UAUGAA*GGA	5
GACGAA*CGA	2
GAUGAA*GGA	2
UUUGAA*GGA	1
GGAGAA*GGA	1
GUUGAA*GGA	1
AUGGAA*GGA	1
UGCGAA*GGA	1
UGUGAA*GGA	1
GAUGAC*CAA	1
GACGAU*GGA	1
GACGAA*AGA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_70923.2 Version IL_70923.2 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_70923.2 Version IL_70923.2 of this group appears in releases 3.80 to 3.86

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Csv

Json