IL_1NJM_052

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUAC*GAGU

Length

8 nucleotides

Bulged bases

1NJM|1|0|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_052 not in the Motif Atlas

Geometric match to IL_2O3V_003

Geometric discrepancy: 0.3947

The information below is about IL_2O3V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

1NJM|1|0|A|1231
1NJM|1|0|U|1232
1NJM|1|0|A|1233
1NJM|1|0|C|1234
*
1NJM|1|0|G|1241
1NJM|1|0|A|1242
1NJM|1|0|G|1243
1NJM|1|0|U|1244

Current chains

Chain 0

23S ribosomal RNA

Nearby chains