IL_1NJM_056

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_056 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.144

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1NJM|1|0|U|1370
1NJM|1|0|G|1371
1NJM|1|0|A|1372
1NJM|1|0|G|1373
1NJM|1|0|G|1374
*
1NJM|1|0|C|1383
1NJM|1|0|G|1384
1NJM|1|0|C|1385
1NJM|1|0|A|1386
1NJM|1|0|G|1387

Current chains

Chain 0

23S ribosomal RNA

Nearby chains