IL_1NJM_061

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAU*AAACG

Length

9 nucleotides

Bulged bases

1NJM|1|0|C|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_061 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.2735

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1NJM|1|0|C|1451
1NJM|1|0|U|1452
1NJM|1|0|A|1453
1NJM|1|0|U|1454
*
1NJM|1|0|A|1567
1NJM|1|0|A|1568
1NJM|1|0|A|1569
1NJM|1|0|C|1570
1NJM|1|0|G|1571

Current chains

Chain 0

23S ribosomal RNA

Nearby chains