IL_1NJM_074

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGC*GAUC

Length

7 nucleotides

Bulged bases

1NJM|1|0|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_074 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2436

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1NJM|1|0|G|1760
1NJM|1|0|G|1761
1NJM|1|0|C|1762
*
1NJM|1|0|G|1963
1NJM|1|0|A|1964
1NJM|1|0|U|1965
1NJM|1|0|C|1966

Current chains

Chain 0

23S ribosomal RNA

Nearby chains