IL_1NJM_081

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_081 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.2904

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

1NJM|1|0|U|1848
1NJM|1|0|G|1849
1NJM|1|0|G|1850
1NJM|1|0|A|1851
1NJM|1|0|G|1852
*
1NJM|1|0|C|1865
1NJM|1|0|G|1866
1NJM|1|0|A|1867
1NJM|1|0|A|1868
1NJM|1|0|A|1869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains