IL_1NJM_094

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUUU*AAAC

Length

8 nucleotides

Bulged bases

1NJM|1|0|A|2168

QA status

Self-complementary: GUUU,AAAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_094 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3106

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

1NJM|1|0|G|2085
1NJM|1|0|U|2086
1NJM|1|0|U|2087
1NJM|1|0|U|2088
*
1NJM|1|0|A|2167
1NJM|1|0|A|2168
1NJM|1|0|A|2169
1NJM|1|0|C|2170

Current chains

Chain 0

23S ribosomal RNA

Nearby chains