Motif IL_69145.1 Version IL_69145.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V7E_005 | 3V7E | 0.2290 | 4 | C | SAM-I riboswitch | G | 114 | A | 115 | A | 116 | A | 117 | * | U | 96 | C | 101 | cWW | cWW | |
| 2 | IL_5FJC_004 | 5FJC | 0.0000 | 4 | Pseudoknot | A | SAM-I riboswitch | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | C | 69 | cWW | cWW |
| 3 | IL_4AOB_004 | 4AOB | 0.1278 | 4 | Pseudoknot | A | SAM-I riboswitch | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | C | 69 | cWW | cWW |
| 4 | IL_4KQY_006 | 4KQY | 0.2147 | 4 | Pseudoknot | A | SAM-I riboswitch | G | 106 | G | 107 | A | 108 | A | 109 | * | U | 85 | C | 90 | cWW | cWW |
| 5 | IL_6AZ4_001 | 6AZ4 | 0.5280 | 0 | A+B | RNA (32-MER) + RNA (9-mer) | G | 9 | C | 10 | C | 11 | G | 12 | * | C | 32 | C | 1 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAA*UCCUGC | 3 |
| GGAA*UCCAGC | 1 |
| GCCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*CCUG | 3 |
| GA*CCAG | 1 |
| CC* | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot (3)
- (2)
- Basepair signature
- cWW-L-cWW-L
- Heat map statistics
- Min 0.13 | Avg 0.27 | Max 0.63
Coloring options: