IL_1NJM_102

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

1NJM|1|0|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_102 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2414

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

1NJM|1|0|G|2379
1NJM|1|0|U|2380
1NJM|1|0|A|2381
1NJM|1|0|C|2382
*
1NJM|1|0|G|2393
1NJM|1|0|G|2394
1NJM|1|0|C|2395

Current chains

Chain 0

23S ribosomal RNA

Nearby chains