IL_1NJM_128

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAUGG*UCUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_128 not in the Motif Atlas

Geometric match to IL_4QLM_002

Geometric discrepancy: 0.3957

The information below is about IL_4QLM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

1NJM|1|0|U|1431
1NJM|1|0|G|1432
1NJM|1|0|A|1433
1NJM|1|0|U|1434
1NJM|1|0|G|1435
1NJM|1|0|G|1436
*
1NJM|1|0|U|1592
1NJM|1|0|C|1593
1NJM|1|0|U|1594
1NJM|1|0|A|1595
1NJM|1|0|A|1596
1NJM|1|0|A|1597

Current chains

Chain 0

23S ribosomal RNA

Nearby chains