IL_1NJM_131

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

1NJM|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJM_131 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.3464

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

1NJM|1|0|G|1683
1NJM|1|0|G|1684
1NJM|1|0|A|1685
1NJM|1|0|A|1686
1NJM|1|0|C|1687
1NJM|1|0|U|1688
1NJM|1|0|U|1689
1NJM|1|0|U|1690
1NJM|1|0|G|1691
*
1NJM|1|0|C|1973
1NJM|1|0|U|1974
1NJM|1|0|G|1975
1NJM|1|0|U|1976
1NJM|1|0|C|1977

Current chains

Chain 0

23S ribosomal RNA

Nearby chains