Motif IL_80252.2 Version IL_80252.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	break		10		11		12		13		14	1-14	2-13	3-11	4-13	9-10
1	IL_8OI5_079	8OI5	0.0554	0	1	LSU rRNA	G	1894	G	1895	A	1896	A	1897	G	1898	U	1899	C	1900	G	1901	G	1902	*	C	2311	U	2312	G	2313	U	2314	C	2315	cWW	tSH	tHW	cWW	cWW
2	IL_8P9A_305	8P9A	0.0466	0	AR	LSU rRNA	G	1898	G	1899	A	1900	A	1901	G	1902	U	1903	C	1904	G	1905	G	1906	*	C	2333	U	2334	G	2335	U	2336	C	2337	cWW	tSH	tHW	cWW	cWW
3	IL_9H3G_086	9H3G	0.0303	0	A	LSU rRNA	G	1900	G	1901	A	1902	A	1903	G	1904	U	1905	C	1906	G	1907	G	1908	*	C	2331	U	2332	G	2333	U	2334	OMC	2335	cWW	tSH	tHW	cWW	cWW
4	IL_8GLP_305	8GLP	0.0000	0	L5	LSU rRNA	G	2847	G	2848	A	2849	A	2850	G	2851	U	2852	C	2853	G	2854	G	2855	*	C	3837	U	3838	G	3839	U	3840	OMC	3841	cWW	tSH	tHW	cWW	cWW
5	IL_9AXU_073	9AXU	0.0263	0	2	LSU rRNA	G	1953	G	1954	A	1955	A	1956	G	1957	U	1958	C	1959	G	1960	G	1961	*	C	2421	U	2422	G	2423	U	2424	C	2425	cWW	tSH	tHW	cWW	cWW
6	IL_4V9F_111	4V9F	0.0717	0	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	U	1748	U	1749	C	1750	G	1751	G	1752	*	C	2031	U	2032	G	2033	U	2034	C	2035	cWW	tSH	tHW	cWW	cWW
7	IL_9E6Q_064	9E6Q	0.0573	0	1	LSU rRNA	G	1810	G	1811	A	1812	A	1813	C	1814	U	1815	OMC	1816	G	1817	G	1818	*	C	2111	U	2112	G	2113	U	2114	OMC	2115	cWW	tSH	tHW	cWW	cWW
8	IL_4WF9_117	4WF9	0.0984	0	X	LSU rRNA	G	1710	G	1711	A	1712	A	1713	C	1714	U	1715	C	1716	G	1717	G	1718	*	C	2017	U	2018	G	2019	U	2020	C	2021	cWW	tSH	tHW	cWW	cWW
9	IL_8B0X_180	8B0X	0.0887	0	a	LSU rRNA	G	1668	G	1669	A	1670	A	1671	C	1672	U	1673	A	1674	G	1675	G	1676	*	C	1994	U	1995	G	1996	U	1997	C	1998	cWW	tSH	tHW	cWW	cWW
10	IL_9DFE_066	9DFE	0.1054	0	1A	LSU rRNA	G	1666	G	1667	A	1668	A	1669	C	1670	U	1671	C	1672	U	1673	G	1674	*	C	1990	U	1991	G	1992	U	1993	C	1994	cWW	tSH	tHW	cWW	cWW
11	IL_7A0S_109	7A0S	0.1136	0	X	LSU rRNA	G	1683	G	1684	A	1685	A	1686	C	1687	U	1688	U	1689	U	1690	G	1691	*	C	1973	U	1974	G	1975	U	1976	C	1977	cWW	tSH	tHW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAAGUCGG*CUGUC	3
GGAAGUCGG*CUGU(OMC)	2
GGAAUUCGG*CUGUC	1
GGAACU(OMC)GG*CUGU(OMC)	1
GGAACUCGG*CUGUC	1
GGAACUAGG*CUGUC	1
GGAACUCUG*CUGUC	1
GGAACUUUG*CUGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAGUCG*UGU	5
GAAUUCG*UGU	1
GAACU(OMC)G*UGU	1
GAACUCG*UGU	1
GAACUAG*UGU	1
GAACUCU*UGU	1
GAACUUU*UGU	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Heat map statistics: Min 0.03 | Avg 0.08 | Max 0.13

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Coloring options: Nucleotide numbers

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