IL_1NJN_007

3D structure

PDB id

1NJN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NJN_007 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2448

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1NJN|1|0|G|165
1NJN|1|0|G|166
1NJN|1|0|A|167
1NJN|1|0|A|168
1NJN|1|0|C|169
1NJN|1|0|U|170
1NJN|1|0|G|171
*
1NJN|1|0|C|178
1NJN|1|0|U|179
1NJN|1|0|C|180
1NJN|1|0|A|181
1NJN|1|0|G|182
1NJN|1|0|U|183
1NJN|1|0|A|184
1NJN|1|0|C|185

Current chains

Chain 0

23S ribosomal RNA

Nearby chains